PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089289.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 662aa    MW: 72195.3 Da    PI: 8.2627
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23112213199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +
  XP_011089289.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--NVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAE 202
                     89****************************998666666..699**********************************************..448 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_011089289.1 203 NGDLCVGIRRA 213
                     8999****997 PP

2Auxin_resp1163.4e-38277357483
      Auxin_resp   4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+++++FevvY+Prast+eF+vk+++v +a+++++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  XP_011089289.1 277 LAANGQPFEVVYYPRASTPEFCVKASSVTAAMRIQWCPGMRFKMPFETEDSSRISWfMGTIASVQVADPLRWPNSPWRLLQ 357
                     6899***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-38103217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-29105218IPR015300DNA-binding pseudobarrel domain
CDDcd100178.38E-22111212No hitNo description
PfamPF023621.1E-21112213IPR003340B3 DNA binding domain
SMARTSM010195.6E-22112214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.098112214IPR003340B3 DNA binding domain
PfamPF065076.8E-33277357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MKEVMEKSLD SELWHACAGG MVQMPPVNSK VFYFPQGHAE HTLTTVDFGA LPKIPPLILC  60
RVAAVKYLAD PETDEVYAKI RLIPVGKNES GFDDDGVLGG SGSASNEKPT SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ NVIAKDVHGE TWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGSGIG GSEPSSGWNS GAAGNFAGFS  240
SFLKEDENKL MHRSVTNGSL REKGKVRPES VLEATFLAAN GQPFEVVYYP RASTPEFCVK  300
ASSVTAAMRI QWCPGMRFKM PFETEDSSRI SWFMGTIASV QVADPLRWPN SPWRLLQVTW  360
DEPDLLQNVK CVSPWLVEMV SNMPVLHLSP FSPPRKKLRL PHHPDFPLDG QLPMPSFSGT  420
PLGPSGPLCC LSDNITAGIQ GARHAQIGVP LSDLHLSNKL QMGLLPPSFL RLNPHAKIPE  480
NKARSNVDGN EHISCLLSLE ISGHKSEKSD GLKTPRFVLF GQPILTEQQM SNDHSCDAVP  540
KLAHGKSCSG GTPRRIANFA PDSGELPKSS STAQFLWKPG YHASDLGLDT GHCKVFLESE  600
DVGAVKQAGA EPFSEFMKNA KRLTILMKPS NNNSERKLIT GLPTAERGLD SSNQAGPLSI  660
FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-84937851388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089289.10.0PREDICTED: auxin response factor 22-like isoform X3
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A068UFQ30.0A0A068UFQ3_COFCA; Auxin response factor
STRINGSolyc11g069500.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16